I have a confusing scenario. We have a number of servers being monitored that have their DNS in an application domain, not their true AD domain. When installing the SCOM agent it picks up the application domain FQDN (properties tab of the agent) and not the true AD FQDN. The console shows the servers by true AD FQDN. The servers show up in the console as "Not monitored".
I have not found a config file or registry entry where I can change this. One option I thought of is to remove the explicit "Primary DNS suffix for this computer", install the agent, then put the application domain suffix back. That is a lot of work, though.
Any other suggestions so I can get these systems monitored?
Thanks,
Steve