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Upgrading SQL 2008 SP3 to SQL 2008 R2 (Security and Authentication Extensions Errors)

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Running SCOM 2007 R2 (CU5).  As part of in-place upgrade of our SCOM SQL instance from SQL 2008 SP3 to SQL 2008 R2 there are a couple of components which are showing as failed on pre upgrade check.  They are the following:

No Custom Security Extensions

No Custom Authentication Extensions

Is it safe to proceed with the in-place upgrade ?  what will impact be ?  what can I do prior to upgrading to remove the risk from these errors ?  I saw some mention of a script called SRSUpgradeTool which may help but some versions of it not being reliable.

Thanks in advance.


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